This function defines the S3 plot method for objects of class
pvEBayes.
Usage
# S3 method for class 'pvEBayes'
plot(x, type = "eyeplot", ...)Arguments
- x
a
pvEBayesobject, which is the output of the function pvEBayes or pvEBayes_tune.- type
character string determining the type of plot to show. Available choices are
"eyeplot"which calls eyeplot_pvEBayes and"heatmap"which calls heatmap_pvEBayes. Note that the input for 'type' is case-sensitive.- ...
additional arguments passed to heatmap_pvEBayes or eyeplot_pvEBayes.
Value
A ggplot object.
Examples
obj <- pvEBayes(statin2025_44, model = "general-gamma", alpha = 0.5)
#> ℹ Fitting general-gamma model...
#> ✔ Fitting general-gamma model... [323ms]
#>
#> ℹ Generating 1000 posterior draws...
#> ✔ Generating 1000 posterior draws... [37ms]
#>
#> Object of class 'pvEBayes'
#>
#> General-gamma model with hyperparameter alpha = 0.5.
#> Estimated prior is a mixture of 18 gamma distributions.
#>
#> Running time of the general-gamma model fitting: 0.3307 seconds.
#> Optimizer convergence: successful.
#> Running time for posterior draws
#> (1000 signal strength posterior draws per AE-drug pair):0.0439 seconds.
#>
#> Extract estimated prior parameters, discovered signals
#> and signal strength posterior draws using `summary()`.
plot(obj, type = "eyeplot")
